Pairwise fitting pdb-3j0f on emdb-2050 by gmfit



Pairwise fitting of target pdb-3j0f on reference emdb-2050 by gmfit(PID:1644535).

RANK[1] Corr.Coeff:0.038 [JSmol] [Molmil]
TARGET(pdb-3j0f)
display:
color:
b'SINDBIS VIRION ' [Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-3j0f)]
REFERENCE(emdb-2050)
display:
color:
Capsid structure and its Stability at the Late Stages of Bacteriophage SPP1 Assembly [Ngauss:20]
[Download the reference map]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.038 0.031 0.025 0.024 0.024 0.024 0.024 0.022 0.022 0.021

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference map "emd_2050.map.gz", and read it.
  2. Download the Target molecule "3j0f"(PDB-format) or "3j0f"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn -0.077786,-0.871442,-0.484290 155.420708 center 0,0,0 model #1
    move 55.584540,-223.820225,136.502832 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!