Pairwise fitting pdb-3izd on pdb-5xjy by gmfit










Pairwise fitting of target pdb-3izd on reference pdb-5xjy by gmfit(PID:4043817).





RANK[1] Corr.Coeff:0.380

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-3izd)

display:



color:



b'MODEL OF THE LARGE SUBUNIT RNA EXPANSION SEGMENT ES27L-OUT BASED ON A ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-3izd)]







REFERENCE(pdb-5xjy)

display:



color:


b'CRYO-EM STRUCTURE OF HUMAN ABCA1                                      ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.380
0.365
0.346
0.307
0.253
0.232
0.218
0.214
0.214
0.177







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "5xjy"(PDB-format) or 
 "5xjy"(mmCIF-format), and read it.

  2.  Download the Target molecule "3izd"(PDB-format) or
  "3izd"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.463447,-0.164538,-0.870715 172.418416 center 0,0,0 model #1
move 215.622284,192.550906,172.318591 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!