Pairwise fitting pdb-3izd on pdb-2xkv by gmfit










Pairwise fitting of target pdb-3izd on reference pdb-2xkv by gmfit(PID:3750712).





RANK[1] Corr.Coeff:0.427

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-3izd)

display:



color:



b'MODEL OF THE LARGE SUBUNIT RNA EXPANSION SEGMENT ES27L-OUT BASED ON A ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-3izd)]







REFERENCE(pdb-2xkv)

display:



color:


b'ATOMIC MODEL OF THE SRP-FTSY EARLY CONFORMATION                       ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.427
0.324
0.277
0.248
0.227
0.186
0.182
0.117
0.093
0.081







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "2xkv"(PDB-format) or 
 "2xkv"(mmCIF-format), and read it.

  2.  Download the Target molecule "3izd"(PDB-format) or
  "3izd"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.663984,0.530784,-0.526681 110.852108 center 0,0,0 model #1
move 247.172464,224.693703,252.659652 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!