Pairwise fitting pdb-3izd on pdb-2w4t by gmfit










Pairwise fitting of target pdb-3izd on reference pdb-2w4t by gmfit(PID:3904688).





RANK[1] Corr.Coeff:0.445

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-3izd)

display:



color:



b'MODEL OF THE LARGE SUBUNIT RNA EXPANSION SEGMENT ES27L-OUT BASED ON A ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-3izd)]







REFERENCE(pdb-2w4t)

display:



color:


b'ISOMETRICALLY CONTRACTING INSECT ASYNCHRONOUS FLIGHT MUSCLE           ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.445
0.331
0.289
0.273
0.203
0.202
0.178
0.174
0.167
0.129







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "2w4t"(PDB-format) or 
 "2w4t"(mmCIF-format), and read it.

  2.  Download the Target molecule "3izd"(PDB-format) or
  "3izd"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.078042,0.934524,-0.347239 139.951495 center 0,0,0 model #1
move -46.379802,21.381457,133.374180 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!