Pairwise fitting pdb-3izd on pdb-2w4g by gmfit



Pairwise fitting of target pdb-3izd on reference pdb-2w4g by gmfit(PID:4113540).

RANK[1] Corr.Coeff:0.491 [JSmol] [Molmil]
TARGET(pdb-3izd)
display:
color:
b'MODEL OF THE LARGE SUBUNIT RNA EXPANSION SEGMENT ES27L-OUT BASED ON A ' [Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-3izd)]
REFERENCE(pdb-2w4g)
display:
color:
b'ISOMETRICALLY CONTRACTING INSECT ASYNCHRONOUS FLIGHT MUSCLE QUICK ' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.491 0.367 0.351 0.329 0.286 0.246 0.176 0.149 0.146 0.111

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "2w4g"(PDB-format) or "2w4g"(mmCIF-format), and read it.
  2. Download the Target molecule "3izd"(PDB-format) or "3izd"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn -0.117644,0.985270,-0.124110 117.127782 center 0,0,0 model #1
    move -74.727958,-23.474018,118.065960 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(pdb 2w4g)] [Download the target GMM(pdb 3izd)] [Download gmfit result file(4113540)]