Pairwise fitting pdb-3izd on pdb-2w4a by gmfit










Pairwise fitting of target pdb-3izd on reference pdb-2w4a by gmfit(PID:36111).





RANK[1] Corr.Coeff:0.424

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-3izd)

display:



color:



b'MODEL OF THE LARGE SUBUNIT RNA EXPANSION SEGMENT ES27L-OUT BASED ON A ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-3izd)]







REFERENCE(pdb-2w4a)

display:



color:


b'ISOMETRICALLY CONTRACTING INSECT ASYNCHRONOUS FLIGHT MUSCLE           ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
rank
1
2
3
4
5
6
7
8
9
10




Corr.Coeff.
0.424
0.375
0.365
0.305
0.299
0.295
0.146
0.123
0.099
0.095







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "2w4a"(PDB-format) or 
 "2w4a"(mmCIF-format), and read it.

  2.  Download the Target molecule "3izd"(PDB-format) or
  "3izd"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.140399,0.808344,-0.571724 96.773056 center 0,0,0 model #1
move -115.451565,71.061152,40.755922 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(pdb 2w4a)]

[Download the target GMM(pdb 3izd)]

[Download gmfit result file(36111)]