Pairwise fitting pdb-3izd on pdb-2w4a by gmfit



Pairwise fitting of target pdb-3izd on reference pdb-2w4a by gmfit(PID:4088237).

RANK[1] Corr.Coeff:0.424 [JSmol] [Molmil]
TARGET(pdb-3izd)
display:
color:
b'MODEL OF THE LARGE SUBUNIT RNA EXPANSION SEGMENT ES27L-OUT BASED ON A ' [Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-3izd)]
REFERENCE(pdb-2w4a)
display:
color:
b'ISOMETRICALLY CONTRACTING INSECT ASYNCHRONOUS FLIGHT MUSCLE ' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.424 0.375 0.365 0.305 0.299 0.295 0.146 0.123 0.099 0.095

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "2w4a"(PDB-format) or "2w4a"(mmCIF-format), and read it.
  2. Download the Target molecule "3izd"(PDB-format) or "3izd"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn -0.140399,0.808344,-0.571724 96.773056 center 0,0,0 model #1
    move -115.451565,71.061152,40.755922 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(pdb 2w4a)] [Download the target GMM(pdb 3izd)] [Download gmfit result file(4088237)]