Pairwise fitting pdb-3izd on pdb-1x1l by gmfit










Pairwise fitting of target pdb-3izd on reference pdb-1x1l by gmfit(PID:3518142).





RANK[1] Corr.Coeff:0.458

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-3izd)

display:



color:



b'MODEL OF THE LARGE SUBUNIT RNA EXPANSION SEGMENT ES27L-OUT BASED ON A ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-3izd)]







REFERENCE(pdb-1x1l)

display:



color:


b"INTERACTION OF ERA,A GTPASE PROTEIN, WITH THE 3'MINOR DOMAIN OF THE   " [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.458
0.350
0.297
0.203
0.188
0.145
0.129
0.105
0.094
0.069







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "1x1l"(PDB-format) or 
 "1x1l"(mmCIF-format), and read it.

  2.  Download the Target molecule "3izd"(PDB-format) or
  "3izd"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.942502,-0.050032,-0.330433 104.599949 center 0,0,0 model #1
move -110.077059,117.640781,29.246332 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!