Pairwise fitting pdb-3izd on emdb-9559 by gmfit










Pairwise fitting of target pdb-3izd on reference emdb-9559 by gmfit(PID:4168692).





RANK[1] Corr.Coeff:0.410

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-3izd)

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b'MODEL OF THE LARGE SUBUNIT RNA EXPANSION SEGMENT ES27L-OUT BASED ON A ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-3izd)]







REFERENCE(emdb-9559)

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IPET 3D reconstruction of a single CNTNAP2: conformation #5 [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.410
0.252
0.243
0.229
0.227
0.224
0.219
0.200
0.180
0.161







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_9559.map.gz", and read it.

  2.  Download the Target molecule "3izd"(PDB-format) or
  "3izd"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.975684,-0.098408,0.195847 112.504811 center 0,0,0 model #1
move -68.831129,49.964001,-54.175518 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(emdb 9559)]

[Download the target GMM(pdb 3izd)]

[Download gmfit result file(4168692)]