Pairwise fitting pdb-3izd on emdb-5958 by gmfit



Pairwise fitting of target pdb-3izd on reference emdb-5958 by gmfit(PID:4131271).

RANK[1] Corr.Coeff:0.349 [JSmol] [Molmil]
TARGET(pdb-3izd)
display:
color:
b'MODEL OF THE LARGE SUBUNIT RNA EXPANSION SEGMENT ES27L-OUT BASED ON A ' [Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-3izd)]
REFERENCE(emdb-5958)
display:
color:
Single particle EM reveals plasticity of interactions between the adenovirus penton base and integrin alphaV-beta3 [Ngauss:20]
[Download the reference map]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.349 0.296 0.269 0.237 0.231 0.202 0.134 0.118 0.115 0.103

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference map "emd_5958.map.gz", and read it.
  2. Download the Target molecule "3izd"(PDB-format) or "3izd"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.121878,-0.820166,-0.558993 129.953373 center 0,0,0 model #1
    move 78.162287,16.978451,-81.861993 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(emdb 5958)] [Download the target GMM(pdb 3izd)] [Download gmfit result file(4131271)]