Pairwise fitting pdb-3izd on emdb-5958 by gmfit










Pairwise fitting of target pdb-3izd on reference emdb-5958 by gmfit(PID:4109785).





RANK[1] Corr.Coeff:0.349

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-3izd)

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b'MODEL OF THE LARGE SUBUNIT RNA EXPANSION SEGMENT ES27L-OUT BASED ON A ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-3izd)]







REFERENCE(emdb-5958)

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Single particle EM reveals plasticity of interactions between the adenovirus penton base and integrin alphaV-beta3 [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.349
0.296
0.269
0.237
0.231
0.202
0.134
0.118
0.115
0.103







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_5958.map.gz", and read it.

  2.  Download the Target molecule "3izd"(PDB-format) or
  "3izd"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.121878,-0.820166,-0.558993 129.953373 center 0,0,0 model #1
move 78.162287,16.978451,-81.861993 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(emdb 5958)]

[Download the target GMM(pdb 3izd)]

[Download gmfit result file(4109785)]