Pairwise fitting pdb-3izd on emdb-5132 by gmfit










Pairwise fitting of target pdb-3izd on reference emdb-5132 by gmfit(PID:2295949).





RANK[1] Corr.Coeff:0.357

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-3izd)

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b'MODEL OF THE LARGE SUBUNIT RNA EXPANSION SEGMENT ES27L-OUT BASED ON A ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-3izd)]







REFERENCE(emdb-5132)

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The reconstructed F120 amyloid fibril represents the structure of a selected subpopulation from the Abeta(1-40) fibril sample with a mean crossover distance of 120 nm. The F140 subpopulation with a mean crossover distance of 140 nm had been studied and deposited previously (EMDB accession no. 5008). [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.357
0.340
0.332
0.300
0.288
0.214
0.147
0.126
0.116
0.113







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_5132.map.gz", and read it.

  2.  Download the Target molecule "3izd"(PDB-format) or
  "3izd"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.078278,-0.882409,0.463926 42.050267 center 0,0,0 model #1
move 72.165608,-13.839641,-64.312486 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!