Pairwise fitting pdb-3izd on emdb-5008 by gmfit










Pairwise fitting of target pdb-3izd on reference emdb-5008 by gmfit(PID:3873156).





RANK[1] Corr.Coeff:0.361

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-3izd)

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b'MODEL OF THE LARGE SUBUNIT RNA EXPANSION SEGMENT ES27L-OUT BASED ON A ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-3izd)]







REFERENCE(emdb-5008)

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Paired beta-sheet structure of an Abeta(1-40) amyloid fibril revealed by electron microscopy [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.361
0.341
0.321
0.308
0.297
0.213
0.163
0.124
0.119
0.107







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_5008.map.gz", and read it.

  2.  Download the Target molecule "3izd"(PDB-format) or
  "3izd"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.147954,-0.824561,0.546085 37.870617 center 0,0,0 model #1
move 70.425373,-16.064076,-60.672356 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!