Pairwise fitting pdb-3izd on emdb-2900 by gmfit



Pairwise fitting of target pdb-3izd on reference emdb-2900 by gmfit(PID:1345201).

RANK[1] Corr.Coeff:0.337 [JSmol] [Molmil]
TARGET(pdb-3izd)
display:
color:
b'MODEL OF THE LARGE SUBUNIT RNA EXPANSION SEGMENT ES27L-OUT BASED ON A ' [Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-3izd)]
REFERENCE(emdb-2900)
display:
color:
Structures of the CRISPR-Cmr complex reveal mode of RNA target positioning [Ngauss:20]
[Download the reference map]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.337 0.285 0.282 0.275 0.270 0.269 0.216 0.198 0.120 0.109

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference map "emd_2900.map.gz", and read it.
  2. Download the Target molecule "3izd"(PDB-format) or "3izd"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn -0.593672,0.795825,-0.119227 158.678759 center 0,0,0 model #1
    move 211.594288,249.571538,209.450316 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!