Pairwise fitting pdb-3izd on emdb-2739 by gmfit










Pairwise fitting of target pdb-3izd on reference emdb-2739 by gmfit(PID:1303854).





RANK[1] Corr.Coeff:0.383

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-3izd)

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b'MODEL OF THE LARGE SUBUNIT RNA EXPANSION SEGMENT ES27L-OUT BASED ON A ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-3izd)]







REFERENCE(emdb-2739)

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Conformational Snapshots of Inducible Nitric Oxide Synthase (iNOS) [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.383
0.318
0.285
0.244
0.200
0.195
0.191
0.174
0.146
0.135







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_2739.map.gz", and read it.

  2.  Download the Target molecule "3izd"(PDB-format) or
  "3izd"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.567383,-0.145756,-0.810451 36.199400 center 0,0,0 model #1
move -139.833368,-33.144569,-28.745949 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!