Pairwise fitting pdb-3izd on emdb-2263 by gmfit










Pairwise fitting of target pdb-3izd on reference emdb-2263 by gmfit(PID:4057670).





RANK[1] Corr.Coeff:0.378

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-3izd)

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b'MODEL OF THE LARGE SUBUNIT RNA EXPANSION SEGMENT ES27L-OUT BASED ON A ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-3izd)]







REFERENCE(emdb-2263)

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negative stain single-particle reconstruction of conformation XVI of the Ltn1 E3 ubiquitin Ligase [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.378
0.315
0.299
0.281
0.249
0.218
0.209
0.201
0.120
0.101







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_2263.map.gz", and read it.

  2.  Download the Target molecule "3izd"(PDB-format) or
  "3izd"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.857064,-0.490849,-0.156552 128.124513 center 0,0,0 model #1
move 165.150111,281.164127,145.118727 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!