Pairwise fitting pdb-3izd on emdb-2261 by gmfit










Pairwise fitting of target pdb-3izd on reference emdb-2261 by gmfit(PID:3540273).





RANK[1] Corr.Coeff:0.355

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-3izd)

display:



color:



b'MODEL OF THE LARGE SUBUNIT RNA EXPANSION SEGMENT ES27L-OUT BASED ON A ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-3izd)]







REFERENCE(emdb-2261)

display:



color:


negative stain single-particle reconstruction of conformation XIV of the Ltn1 E3 ubiquitin Ligase [Ngauss:20]



[Download the reference map]





Other Transformations
rank
1
2
3
4
5
6
7
8
9
10




Corr.Coeff.
0.355
0.327
0.280
0.246
0.224
0.135
0.119
0.112
0.109
0.091







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_2261.map.gz", and read it.

  2.  Download the Target molecule "3izd"(PDB-format) or
  "3izd"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.849778,-0.121680,0.512904 81.420851 center 0,0,0 model #1
move 133.449307,81.268003,222.968743 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!