Pairwise fitting pdb-3izd on emdb-2214 by gmfit



Pairwise fitting of target pdb-3izd on reference emdb-2214 by gmfit(PID:1420721).

RANK[1] Corr.Coeff:0.466 [JSmol] [Molmil]
TARGET(pdb-3izd)
display:
color:
b'MODEL OF THE LARGE SUBUNIT RNA EXPANSION SEGMENT ES27L-OUT BASED ON A ' [Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-3izd)]
REFERENCE(emdb-2214)
display:
color:
DOLORS: Versatile Strategy for Internal Labeling and Domain Localization in Electron Microscopy [Ngauss:20]
[Download the reference map]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.466 0.361 0.287 0.281 0.251 0.168 0.157 0.116 0.089 0.073

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference map "emd_2214.map.gz", and read it.
  2. Download the Target molecule "3izd"(PDB-format) or "3izd"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn -0.423376,-0.375847,0.824313 135.152026 center 0,0,0 model #1
    move 208.670230,90.983417,176.442162 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!