Pairwise fitting pdb-3izd on emdb-1105 by gmfit










Pairwise fitting of target pdb-3izd on reference emdb-1105 by gmfit(PID:2421277).





RANK[1] Corr.Coeff:0.475

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-3izd)

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b'MODEL OF THE LARGE SUBUNIT RNA EXPANSION SEGMENT ES27L-OUT BASED ON A ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-3izd)]







REFERENCE(emdb-1105)

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Global conformational rearrangements during the activation of the GDP/GTP exchange factor Vav3. [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.475
0.449
0.421
0.334
0.317
0.301
0.296
0.153
0.137
0.103







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_1105.map.gz", and read it.

  2.  Download the Target molecule "3izd"(PDB-format) or
  "3izd"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.722311,-0.068640,-0.688153 153.414753 center 0,0,0 model #1
move -46.379559,59.634159,-68.088030 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!