Pairwise fitting pdb-3gzu on pdb-5l35 by gmfit



Pairwise fitting of target pdb-3gzu on reference pdb-5l35 by gmfit(PID:1573179).

RANK[1] Corr.Coeff:0.467 [JSmol] [Molmil]
TARGET(pdb-3gzu)
display:
color:
b'VP7 RECOATED ROTAVIRUS DLP ' [Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-3gzu)]
REFERENCE(pdb-5l35)
display:
color:
b'CRYO-EM STRUCTURE OF BACTERIOPHAGE SF6 AT 2.9 ANGSTROM RESOLUTION ' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.467 0.439 0.429 0.422 0.422 0.419 0.411 0.398 0.397 0.387

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "5l35"(PDB-format) or "5l35"(mmCIF-format), and read it.
  2. Download the Target molecule "3gzu"(PDB-format) or "3gzu"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.140266,-0.285273,0.948127 153.698845 center 0,0,0 model #1
    move 234.328950,294.249157,187.764892 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!