Pairwise fitting pdb-3gzu on pdb-4an5 by gmfit



Pairwise fitting of target pdb-3gzu on reference pdb-4an5 by gmfit(PID:4129558).

RANK[1] Corr.Coeff:0.370 [JSmol] [Molmil]
TARGET(pdb-3gzu)
display:
color:
b'VP7 RECOATED ROTAVIRUS DLP ' [Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-3gzu)]
REFERENCE(pdb-4an5)
display:
color:
b'CAPSID STRUCTURE AND ITS STABILITY AT THE LATE STAGES OF BACTERIOPHAGE' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.370 0.327 0.315 0.305 0.304 0.301 0.300 0.287 0.285 0.278

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "4an5"(PDB-format) or "4an5"(mmCIF-format), and read it.
  2. Download the Target molecule "3gzu"(PDB-format) or "3gzu"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn -0.916130,0.360762,0.174806 172.514561 center 0,0,0 model #1
    move 352.347450,354.892401,161.662969 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(pdb 4an5)] [Download the target GMM(pdb 3gzu)] [Download gmfit result file(4129558)]