Pairwise fitting pdb-3gzu on pdb-3j4u by gmfit



Pairwise fitting of target pdb-3gzu on reference pdb-3j4u by gmfit(PID:1248230).

RANK[1] Corr.Coeff:0.463 [JSmol] [Molmil]
TARGET(pdb-3gzu)
display:
color:
b'VP7 RECOATED ROTAVIRUS DLP ' [Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-3gzu)]
REFERENCE(pdb-3j4u)
display:
color:
b'A NEW TOPOLOGY OF THE HK97-LIKE FOLD REVEALED IN BORDETELLA ' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.463 0.442 0.440 0.406 0.402 0.401 0.401 0.382 0.367 0.361

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "3j4u"(PDB-format) or "3j4u"(mmCIF-format), and read it.
  2. Download the Target molecule "3gzu"(PDB-format) or "3gzu"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn -0.284221,0.929548,-0.234859 157.208481 center 0,0,0 model #1
    move 140.152876,-4.453554,539.401161 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!