Pairwise fitting pdb-3gzu on pdb-2xd8 by gmfit



Pairwise fitting of target pdb-3gzu on reference pdb-2xd8 by gmfit(PID:4150067).

RANK[1] Corr.Coeff:0.438 [JSmol] [Molmil]
TARGET(pdb-3gzu)
display:
color:
b'VP7 RECOATED ROTAVIRUS DLP ' [Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-3gzu)]
REFERENCE(pdb-2xd8)
display:
color:
b'CAPSID STRUCTURE OF THE INFECTIOUS PROCHLOROCOCCUS CYANOPHAGE P-SSP7 ' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.438 0.396 0.394 0.385 0.382 0.375 0.368 0.357 0.351 0.349

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "2xd8"(PDB-format) or "2xd8"(mmCIF-format), and read it.
  2. Download the Target molecule "3gzu"(PDB-format) or "3gzu"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.476213,-0.735864,-0.481379 125.419953 center 0,0,0 model #1
    move 127.959619,-33.680733,-440.083128 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(pdb 2xd8)] [Download the target GMM(pdb 3gzu)] [Download gmfit result file(4150067)]