Pairwise fitting pdb-3gzu on pdb-2xd8 by gmfit










Pairwise fitting of target pdb-3gzu on reference pdb-2xd8 by gmfit(PID:4150067).





RANK[1] Corr.Coeff:0.438

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-3gzu)

display:



color:



b'VP7 RECOATED ROTAVIRUS DLP                                            ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-3gzu)]







REFERENCE(pdb-2xd8)

display:



color:


b'CAPSID STRUCTURE OF THE INFECTIOUS PROCHLOROCOCCUS CYANOPHAGE P-SSP7  ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.438
0.396
0.394
0.385
0.382
0.375
0.368
0.357
0.351
0.349







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "2xd8"(PDB-format) or 
 "2xd8"(mmCIF-format), and read it.

  2.  Download the Target molecule "3gzu"(PDB-format) or
  "3gzu"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.476213,-0.735864,-0.481379 125.419953 center 0,0,0 model #1
move 127.959619,-33.680733,-440.083128 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(pdb 2xd8)]

[Download the target GMM(pdb 3gzu)]

[Download gmfit result file(4150067)]