Pairwise fitting pdb-3dg5 on pdb-5t7v by gmfit










Pairwise fitting of target pdb-3dg5 on reference pdb-5t7v by gmfit(PID:3520856).





RANK[1] Corr.Coeff:0.868

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-3dg5)

display:



color:



b'COORDINATES OF 16S AND 23S RRNAS FITTED INTO THE CRYO-EM MAP OF RF3-  ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-3dg5)]







REFERENCE(pdb-5t7v)

display:



color:


 [Ngauss:20]



[Download the reference pdb]





Other Transformations
rank
1
2
3
4
5
6
7
8
9
10




Corr.Coeff.
0.868
0.742
0.732
0.724
0.712
0.695
0.691
0.689
0.678
0.663







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "5t7v"(PDB-format) or 
 "5t7v"(mmCIF-format), and read it.

  2.  Download the Target molecule "3dg5"(PDB-format) or
  "3dg5"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.065299,0.601422,0.796259 160.780171 center 0,0,0 model #1
move 171.147195,174.678210,170.881369 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!