Pairwise fitting pdb-3dg5 on pdb-3j9w by gmfit



Pairwise fitting of target pdb-3dg5 on reference pdb-3j9w by gmfit(PID:1338745).

RANK[1] Corr.Coeff:0.871 [JSmol] [Molmil]
TARGET(pdb-3dg5)
display:
color:
b'COORDINATES OF 16S AND 23S RRNAS FITTED INTO THE CRYO-EM MAP OF RF3- ' [Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-3dg5)]
REFERENCE(pdb-3j9w)
display:
color:
[Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.871 0.839 0.779 0.758 0.727 0.722 0.711 0.701 0.698 0.679

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "3j9w"(PDB-format) or "3j9w"(mmCIF-format), and read it.
  2. Download the Target molecule "3dg5"(PDB-format) or "3dg5"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn -0.681755,-0.729923,0.049226 179.885408 center 0,0,0 model #1
    move 194.701517,180.271890,194.656408 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!