Pairwise fitting pdb-3dg5 on emdb-8521 by gmfit



Pairwise fitting of target pdb-3dg5 on reference emdb-8521 by gmfit(PID:4090908).

RANK[1] Corr.Coeff:0.897 [JSmol] [Molmil]
TARGET(pdb-3dg5)
display:
color:
b'COORDINATES OF 16S AND 23S RRNAS FITTED INTO THE CRYO-EM MAP OF RF3- ' [Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-3dg5)]
REFERENCE(emdb-8521)
display:
color:
3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure II) [Ngauss:20]
[Download the reference map]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.897 0.755 0.737 0.729 0.695 0.687 0.671 0.666 0.657 0.653

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference map "emd_8521.map.gz", and read it.
  2. Download the Target molecule "3dg5"(PDB-format) or "3dg5"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.881056,-0.397251,0.256771 67.327886 center 0,0,0 model #1
    move 200.725134,196.771515,185.940519 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(emdb 8521)] [Download the target GMM(pdb 3dg5)] [Download gmfit result file(4090908)]