Pairwise fitting pdb-3dg5 on emdb-8434 by gmfit



Pairwise fitting of target pdb-3dg5 on reference emdb-8434 by gmfit(PID:4103128).

RANK[1] Corr.Coeff:0.828 [JSmol] [Molmil]
TARGET(pdb-3dg5)
display:
color:
b'COORDINATES OF 16S AND 23S RRNAS FITTED INTO THE CRYO-EM MAP OF RF3- ' [Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-3dg5)]
REFERENCE(emdb-8434)
display:
color:
Structure of bL17-depleted large ribosomal subunit assembly intermediate - Class A [Ngauss:20]
[Download the reference map]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.828 0.722 0.692 0.690 0.682 0.670 0.661 0.652 0.648 0.640

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference map "emd_8434.map.gz", and read it.
  2. Download the Target molecule "3dg5"(PDB-format) or "3dg5"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn -0.180518,0.378707,0.907741 158.284111 center 0,0,0 model #1
    move 204.144868,213.855948,198.286509 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(emdb 8434)] [Download the target GMM(pdb 3dg5)] [Download gmfit result file(4103128)]