Pairwise fitting pdb-3dg5 on emdb-8434 by gmfit










Pairwise fitting of target pdb-3dg5 on reference emdb-8434 by gmfit(PID:4103128).





RANK[1] Corr.Coeff:0.828

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-3dg5)

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b'COORDINATES OF 16S AND 23S RRNAS FITTED INTO THE CRYO-EM MAP OF RF3-  ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-3dg5)]







REFERENCE(emdb-8434)

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Structure of bL17-depleted large ribosomal subunit assembly intermediate - Class A [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.828
0.722
0.692
0.690
0.682
0.670
0.661
0.652
0.648
0.640







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_8434.map.gz", and read it.

  2.  Download the Target molecule "3dg5"(PDB-format) or
  "3dg5"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.180518,0.378707,0.907741 158.284111 center 0,0,0 model #1
move 204.144868,213.855948,198.286509 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(emdb 8434)]

[Download the target GMM(pdb 3dg5)]

[Download gmfit result file(4103128)]