Pairwise fitting pdb-3dg5 on emdb-4126 by gmfit



Pairwise fitting of target pdb-3dg5 on reference emdb-4126 by gmfit(PID:4058919).

RANK[1] Corr.Coeff:0.922 [JSmol] [Molmil]
TARGET(pdb-3dg5)
display:
color:
b'COORDINATES OF 16S AND 23S RRNAS FITTED INTO THE CRYO-EM MAP OF RF3- ' [Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-3dg5)]
REFERENCE(emdb-4126)
display:
color:
Structure of the 70S ribosome with fMetSec-tRNASec in the hybrid pre-translocation state (H) [Ngauss:20]
[Download the reference map]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.922 0.773 0.772 0.740 0.720 0.709 0.708 0.705 0.694 0.691

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference map "emd_4126.map.gz", and read it.
  2. Download the Target molecule "3dg5"(PDB-format) or "3dg5"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn -0.785733,-0.166478,0.595742 128.115555 center 0,0,0 model #1
    move 162.691853,156.278764,160.923406 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(emdb 4126)] [Download the target GMM(pdb 3dg5)] [Download gmfit result file(4058919)]