Pairwise fitting pdb-3dg5 on emdb-4126 by gmfit










Pairwise fitting of target pdb-3dg5 on reference emdb-4126 by gmfit(PID:4132202).





RANK[1] Corr.Coeff:0.922

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-3dg5)

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b'COORDINATES OF 16S AND 23S RRNAS FITTED INTO THE CRYO-EM MAP OF RF3-  ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-3dg5)]







REFERENCE(emdb-4126)

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Structure of the 70S ribosome with fMetSec-tRNASec in the hybrid pre-translocation state (H) [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.922
0.773
0.772
0.740
0.720
0.709
0.708
0.705
0.694
0.691







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_4126.map.gz", and read it.

  2.  Download the Target molecule "3dg5"(PDB-format) or
  "3dg5"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.785733,-0.166478,0.595742 128.115555 center 0,0,0 model #1
move 162.691853,156.278764,160.923406 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(emdb 4126)]

[Download the target GMM(pdb 3dg5)]

[Download gmfit result file(4132202)]