Pairwise fitting pdb-3dg5 on emdb-1045 by gmfit



Pairwise fitting of target pdb-3dg5 on reference emdb-1045 by gmfit(PID:1205354).

RANK[1] Corr.Coeff:0.875 [JSmol] [Molmil]
TARGET(pdb-3dg5)
display:
color:
b'COORDINATES OF 16S AND 23S RRNAS FITTED INTO THE CRYO-EM MAP OF RF3- ' [Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-3dg5)]
REFERENCE(emdb-1045)
display:
color:
Cryo-EM reveals an active role for aminoacyl-tRNA in the accommodation process. [Ngauss:20]
[Download the reference map]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.875 0.701 0.692 0.673 0.670 0.655 0.652 0.644 0.637 0.625

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference map "emd_1045.map.gz", and read it.
  2. Download the Target molecule "3dg5"(PDB-format) or "3dg5"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.935274,0.062049,-0.348444 4.752077 center 0,0,0 model #1
    move -4.514921,-2.498280,-4.013129 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!