Pairwise fitting pdb-3dg4 on pdb-5oom by gmfit



Pairwise fitting of target pdb-3dg4 on reference pdb-5oom by gmfit(PID:1603107).

RANK[1] Corr.Coeff:0.713 [JSmol] [Molmil]
TARGET(pdb-3dg4)
display:
color:
b'COORDINATES OF 16S AND 23S RRNAS FITTED INTO THE CRYO-EM MAP OF RF1- ' [Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-3dg4)]
REFERENCE(pdb-5oom)
display:
color:
b'STRUCTURE OF A NATIVE ASSEMBLY INTERMEDIATE OF THE HUMAN MITOCHONDRIAL' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.713 0.642 0.641 0.640 0.633 0.618 0.613 0.603 0.601 0.580

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "5oom"(PDB-format) or "5oom"(mmCIF-format), and read it.
  2. Download the Target molecule "3dg4"(PDB-format) or "3dg4"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn -0.628484,-0.737143,0.248249 119.887295 center 0,0,0 model #1
    move 176.540393,178.570540,181.104923 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!