Pairwise fitting pdb-3dg4 on pdb-5kpv by gmfit










Pairwise fitting of target pdb-3dg4 on reference pdb-5kpv by gmfit(PID:4087588).





RANK[1] Corr.Coeff:0.873

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-3dg4)

display:



color:



b'COORDINATES OF 16S AND 23S RRNAS FITTED INTO THE CRYO-EM MAP OF RF1-  ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-3dg4)]







REFERENCE(pdb-5kpv)

display:



color:


 [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.873
0.824
0.770
0.750
0.745
0.744
0.726
0.725
0.722
0.722







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "5kpv"(PDB-format) or 
 "5kpv"(mmCIF-format), and read it.

  2.  Download the Target molecule "3dg4"(PDB-format) or
  "3dg4"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.834481,0.449112,-0.319279 6.240171 center 0,0,0 model #1
move 186.987440,196.646461,190.468209 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!