Pairwise fitting pdb-3dg4 on pdb-3dg0 by gmfit










Pairwise fitting of target pdb-3dg4 on reference pdb-3dg0 by gmfit(PID:549624).





RANK[1] Corr.Coeff:0.965

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-3dg4)

display:



color:



b'COORDINATES OF 16S AND 23S RRNAS FITTED INTO THE CRYO-EM MAP OF RF1-  ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-3dg4)]







REFERENCE(pdb-3dg0)

display:



color:


b'COORDINATES OF 16S AND 23S RRNAS FITTED INTO THE CRYO-EM MAP OF EF-G- ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
rank
1
2
3
4
5
6
7
8
9
10




Corr.Coeff.
0.965
0.876
0.722
0.717
0.703
0.685
0.684
0.684
0.678
0.675







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "3dg0"(PDB-format) or 
 "3dg0"(mmCIF-format), and read it.

  2.  Download the Target molecule "3dg4"(PDB-format) or
  "3dg4"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.639694,0.324669,0.696693 3.046210 center 0,0,0 model #1
move -3.574030,-0.354486,-1.219056 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!