Pairwise fitting pdb-3dg4 on emdb-8402 by gmfit










Pairwise fitting of target pdb-3dg4 on reference emdb-8402 by gmfit(PID:4128443).





RANK[1] Corr.Coeff:0.895

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-3dg4)

display:



color:



b'COORDINATES OF 16S AND 23S RRNAS FITTED INTO THE CRYO-EM MAP OF RF1-  ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-3dg4)]







REFERENCE(emdb-8402)

display:



color:


Methicillin sensitive Staphylococcus aureus 70S ribosome [Ngauss:20]



[Download the reference map]





Other Transformations
rank
1
2
3
4
5
6
7
8
9
10




Corr.Coeff.
0.895
0.864
0.753
0.739
0.729
0.704
0.701
0.695
0.679
0.666







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_8402.map.gz", and read it.

  2.  Download the Target molecule "3dg4"(PDB-format) or
  "3dg4"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.867591,0.175454,0.465297 0.932718 center 0,0,0 model #1
move 197.048691,193.941942,195.937149 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(emdb 8402)]

[Download the target GMM(pdb 3dg4)]

[Download gmfit result file(4128443)]