Pairwise fitting pdb-3dg4 on emdb-8281 by gmfit










Pairwise fitting of target pdb-3dg4 on reference emdb-8281 by gmfit(PID:2548891).





RANK[1] Corr.Coeff:0.890

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-3dg4)

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b'COORDINATES OF 16S AND 23S RRNAS FITTED INTO THE CRYO-EM MAP OF RF1-  ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-3dg4)]







REFERENCE(emdb-8281)

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Structure of RelA bound to ribosome in presence of A/R tRNA (Structure III) [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.890
0.860
0.753
0.722
0.716
0.708
0.706
0.694
0.685
0.681







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_8281.map.gz", and read it.

  2.  Download the Target molecule "3dg4"(PDB-format) or
  "3dg4"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.976657,0.023130,-0.213555 4.038868 center 0,0,0 model #1
move 190.048192,194.603958,192.324116 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!