Pairwise fitting pdb-3dg4 on emdb-8237 by gmfit



Pairwise fitting of target pdb-3dg4 on reference emdb-8237 by gmfit(PID:4150579).

RANK[1] Corr.Coeff:0.913 [JSmol] [Molmil]
TARGET(pdb-3dg4)
display:
color:
b'COORDINATES OF 16S AND 23S RRNAS FITTED INTO THE CRYO-EM MAP OF RF1- ' [Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-3dg4)]
REFERENCE(emdb-8237)
display:
color:
Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Avilamycin C, mRNA and P-site tRNA at 3.6A resolution [Ngauss:20]
[Download the reference map]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.913 0.878 0.742 0.712 0.706 0.696 0.662 0.660 0.658 0.650

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference map "emd_8237.map.gz", and read it.
  2. Download the Target molecule "3dg4"(PDB-format) or "3dg4"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.696432,0.717019,-0.029435 178.027562 center 0,0,0 model #1
    move 192.713502,181.700205,192.892219 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(emdb 8237)] [Download the target GMM(pdb 3dg4)] [Download gmfit result file(4150579)]