Pairwise fitting pdb-3dg4 on emdb-6709 by gmfit










Pairwise fitting of target pdb-3dg4 on reference emdb-6709 by gmfit(PID:4131772).





RANK[1] Corr.Coeff:0.887

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-3dg4)

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b'COORDINATES OF 16S AND 23S RRNAS FITTED INTO THE CRYO-EM MAP OF RF1-  ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-3dg4)]







REFERENCE(emdb-6709)

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Structure of the 70S chloroplast ribosome from spinach [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.887
0.738
0.732
0.726
0.715
0.698
0.696
0.685
0.664
0.662







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_6709.map.gz", and read it.

  2.  Download the Target molecule "3dg4"(PDB-format) or
  "3dg4"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.674761,-0.738035,0.001569 177.333812 center 0,0,0 model #1
move 197.123617,204.836594,207.630879 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(emdb 6709)]

[Download the target GMM(pdb 3dg4)]

[Download gmfit result file(4131772)]