Pairwise fitting pdb-3dg4 on emdb-6709 by gmfit



Pairwise fitting of target pdb-3dg4 on reference emdb-6709 by gmfit(PID:4061048).

RANK[1] Corr.Coeff:0.887 [JSmol] [Molmil]
TARGET(pdb-3dg4)
display:
color:
b'COORDINATES OF 16S AND 23S RRNAS FITTED INTO THE CRYO-EM MAP OF RF1- ' [Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-3dg4)]
REFERENCE(emdb-6709)
display:
color:
Structure of the 70S chloroplast ribosome from spinach [Ngauss:20]
[Download the reference map]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.887 0.738 0.732 0.726 0.715 0.698 0.696 0.685 0.664 0.662

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference map "emd_6709.map.gz", and read it.
  2. Download the Target molecule "3dg4"(PDB-format) or "3dg4"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn -0.674761,-0.738035,0.001569 177.333812 center 0,0,0 model #1
    move 197.123617,204.836594,207.630879 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(emdb 6709)] [Download the target GMM(pdb 3dg4)] [Download gmfit result file(4061048)]