Pairwise fitting pdb-3dg4 on emdb-5036 by gmfit










Pairwise fitting of target pdb-3dg4 on reference emdb-5036 by gmfit(PID:1513125).





RANK[1] Corr.Coeff:0.904

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-3dg4)

display:



color:



b'COORDINATES OF 16S AND 23S RRNAS FITTED INTO THE CRYO-EM MAP OF RF1-  ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-3dg4)]







REFERENCE(emdb-5036)

display:



color:


Aminoacyl-tRNA-EF-Tu-GDP-kir ternary complex-bound E. coli 70S ribosome [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.904
0.737
0.716
0.711
0.683
0.683
0.676
0.676
0.673
0.670







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_5036.map.gz", and read it.

  2.  Download the Target molecule "3dg4"(PDB-format) or
  "3dg4"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.922009,-0.126046,-0.366077 3.137565 center 0,0,0 model #1
move -2.939104,-3.227654,-5.269778 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!