Pairwise fitting pdb-3dg4 on emdb-4122 by gmfit



Pairwise fitting of target pdb-3dg4 on reference emdb-4122 by gmfit(PID:1071088).

RANK[1] Corr.Coeff:0.914 [JSmol] [Molmil]
TARGET(pdb-3dg4)
display:
color:
b'COORDINATES OF 16S AND 23S RRNAS FITTED INTO THE CRYO-EM MAP OF RF1- ' [Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-3dg4)]
REFERENCE(emdb-4122)
display:
color:
Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the initial binding state (IB) [Ngauss:20]
[Download the reference map]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.914 0.771 0.748 0.732 0.715 0.715 0.713 0.712 0.706 0.703

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference map "emd_4122.map.gz", and read it.
  2. Download the Target molecule "3dg4"(PDB-format) or "3dg4"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn -0.775892,-0.162590,0.609554 127.555888 center 0,0,0 model #1
    move 160.317456,153.682859,162.544331 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!