Pairwise fitting pdb-3dg4 on emdb-3492 by gmfit



Pairwise fitting of target pdb-3dg4 on reference emdb-3492 by gmfit(PID:1409963).

RANK[1] Corr.Coeff:0.901 [JSmol] [Molmil]
TARGET(pdb-3dg4)
display:
color:
b'COORDINATES OF 16S AND 23S RRNAS FITTED INTO THE CRYO-EM MAP OF RF1- ' [Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-3dg4)]
REFERENCE(emdb-3492)
display:
color:
Structure of ArfA and TtRF2 bound to the 70S ribosome (pre-accommodated state) [Ngauss:20]
[Download the reference map]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.901 0.778 0.759 0.738 0.712 0.701 0.695 0.684 0.683 0.680

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference map "emd_3492.map.gz", and read it.
  2. Download the Target molecule "3dg4"(PDB-format) or "3dg4"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.460612,-0.696447,-0.550271 115.751319 center 0,0,0 model #1
    move 217.066273,212.834808,208.850321 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!