Pairwise fitting pdb-1x18 on pdb-5uak by gmfit



Pairwise fitting of target pdb-1x18 on reference pdb-5uak by gmfit(PID:1489861).

RANK[1] Corr.Coeff:0.567 [JSmol] [Molmil]
TARGET(pdb-1x18)
display:
color:
b'CONTACT SITES OF ERA GTPASE ON THE THERMUS THERMOPHILUS 30S SUBUNIT ' [Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-1x18)]
REFERENCE(pdb-5uak)
display:
color:
b'DEPHOSPHORYLATED, ATP-FREE HUMAN CYSTIC FIBROSIS TRANSMEMBRANE ' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.567 0.541 0.510 0.508 0.498 0.495 0.485 0.481 0.431 0.345

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "5uak"(PDB-format) or "5uak"(mmCIF-format), and read it.
  2. Download the Target molecule "1x18"(PDB-format) or "1x18"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.300349,0.922569,0.242192 141.418879 center 0,0,0 model #1
    move 59.032166,167.355858,144.491355 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!