Pairwise fitting pdb-1x18 on pdb-5sy1 by gmfit










Pairwise fitting of target pdb-1x18 on reference pdb-5sy1 by gmfit(PID:4085822).





RANK[1] Corr.Coeff:0.618

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-1x18)

display:



color:



b'CONTACT SITES OF ERA GTPASE ON THE THERMUS THERMOPHILUS 30S SUBUNIT   ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-1x18)]







REFERENCE(pdb-5sy1)

display:



color:


b'STRUCTURE OF THE STRA6 RECEPTOR FOR RETINOL UPTAKE IN COMPLEX WITH    ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
rank
1
2
3
4
5
6
7
8
9
10




Corr.Coeff.
0.618
0.544
0.535
0.531
0.514
0.504
0.503
0.500
0.422
0.358







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "5sy1"(PDB-format) or 
 "5sy1"(mmCIF-format), and read it.

  2.  Download the Target molecule "1x18"(PDB-format) or
  "1x18"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.177339,-0.482643,-0.857675 132.820907 center 0,0,0 model #1
move 70.766496,52.593860,119.538046 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!