Pairwise fitting pdb-1x18 on pdb-5fwk by gmfit



Pairwise fitting of target pdb-1x18 on reference pdb-5fwk by gmfit(PID:1568651).

RANK[1] Corr.Coeff:0.563 [JSmol] [Molmil]
TARGET(pdb-1x18)
display:
color:
b'CONTACT SITES OF ERA GTPASE ON THE THERMUS THERMOPHILUS 30S SUBUNIT ' [Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-1x18)]
REFERENCE(pdb-5fwk)
display:
color:
b'ATOMIC CRYOEM STRUCTURE OF HSP90-CDC37-CDK4 COMPLEX ' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.563 0.517 0.512 0.489 0.487 0.483 0.462 0.453 0.433 0.422

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "5fwk"(PDB-format) or "5fwk"(mmCIF-format), and read it.
  2. Download the Target molecule "1x18"(PDB-format) or "1x18"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn -0.832495,-0.379582,0.403572 82.967721 center 0,0,0 model #1
    move 258.612851,166.056938,184.609790 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!