Pairwise fitting pdb-1x18 on pdb-4au6 by gmfit










Pairwise fitting of target pdb-1x18 on reference pdb-4au6 by gmfit(PID:2117529).





RANK[1] Corr.Coeff:0.608

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-1x18)

display:



color:



b'CONTACT SITES OF ERA GTPASE ON THE THERMUS THERMOPHILUS 30S SUBUNIT   ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-1x18)]







REFERENCE(pdb-4au6)

display:



color:


b'LOCATION OF THE DSRNA-DEPENDENT POLYMERASE, VP1, IN ROTAVIRUS         ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.608
0.607
0.594
0.593
0.576
0.570
0.568
0.567
0.563
0.548







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "4au6"(PDB-format) or 
 "4au6"(mmCIF-format), and read it.

  2.  Download the Target molecule "1x18"(PDB-format) or
  "1x18"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.374503,-0.309215,0.874147 166.909997 center 0,0,0 model #1
move 95.413014,67.918178,-227.594287 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!