Pairwise fitting pdb-1x18 on pdb-3jb6 by gmfit










Pairwise fitting of target pdb-1x18 on reference pdb-3jb6 by gmfit(PID:2342484).





RANK[1] Corr.Coeff:0.603

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-1x18)

display:



color:



b'CONTACT SITES OF ERA GTPASE ON THE THERMUS THERMOPHILUS 30S SUBUNIT   ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-1x18)]







REFERENCE(pdb-3jb6)

display:



color:


b'IN SITU STRUCTURES OF THE SEGMENTED GENOME AND RNA POLYMERASE COMPLEX ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.603
0.567
0.553
0.530
0.527
0.523
0.500
0.476
0.430
0.412







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "3jb6"(PDB-format) or 
 "3jb6"(mmCIF-format), and read it.

  2.  Download the Target molecule "1x18"(PDB-format) or
  "1x18"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.174840,0.866444,-0.467660 88.418980 center 0,0,0 model #1
move 58.575173,-76.481820,123.286611 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!