Pairwise fitting pdb-1x18 on pdb-3j08 by gmfit










Pairwise fitting of target pdb-1x18 on reference pdb-3j08 by gmfit(PID:2316780).





RANK[1] Corr.Coeff:0.624

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-1x18)

display:



color:



b'CONTACT SITES OF ERA GTPASE ON THE THERMUS THERMOPHILUS 30S SUBUNIT   ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-1x18)]







REFERENCE(pdb-3j08)

display:



color:


b'HIGH RESOLUTION HELICAL RECONSTRUCTION OF THE BACTERIAL P-TYPE ATPASE ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.624
0.586
0.577
0.488
0.486
0.478
0.418
0.417
0.391
0.377







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "3j08"(PDB-format) or 
 "3j08"(mmCIF-format), and read it.

  2.  Download the Target molecule "1x18"(PDB-format) or
  "1x18"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.654509,-0.605299,0.453024 105.212577 center 0,0,0 model #1
move 119.200060,95.501149,85.943386 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!