Pairwise fitting pdb-1x18 on pdb-2xkx by gmfit










Pairwise fitting of target pdb-1x18 on reference pdb-2xkx by gmfit(PID:309789).





RANK[1] Corr.Coeff:0.567

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-1x18)

display:



color:



b'CONTACT SITES OF ERA GTPASE ON THE THERMUS THERMOPHILUS 30S SUBUNIT   ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-1x18)]







REFERENCE(pdb-2xkx)

display:



color:


b'SINGLE PARTICLE ANALYSIS OF PSD-95 IN NEGATIVE STAIN                  ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.567
0.549
0.502
0.488
0.473
0.468
0.445
0.435
0.413
0.402







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "2xkx"(PDB-format) or 
 "2xkx"(mmCIF-format), and read it.

  2.  Download the Target molecule "1x18"(PDB-format) or
  "1x18"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.181391,0.875457,0.447965 149.089134 center 0,0,0 model #1
move -91.180550,-14.836095,-13.649232 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!