Pairwise fitting pdb-1x18 on emdb-8350 by gmfit



Pairwise fitting of target pdb-1x18 on reference emdb-8350 by gmfit(PID:4060886).

RANK[1] Corr.Coeff:0.603 [JSmol] [Molmil]
TARGET(pdb-1x18)
display:
color:
b'CONTACT SITES OF ERA GTPASE ON THE THERMUS THERMOPHILUS 30S SUBUNIT ' [Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-1x18)]
REFERENCE(emdb-8350)
display:
color:
Cryo-EM Structure of Yeast Pre-40S, Rio2 Region Local Class "R1" [Ngauss:20]
[Download the reference map]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.603 0.573 0.545 0.520 0.484 0.475 0.469 0.430 0.422 0.419

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference map "emd_8350.map.gz", and read it.
  2. Download the Target molecule "1x18"(PDB-format) or "1x18"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.760157,-0.542106,-0.358165 101.747440 center 0,0,0 model #1
    move 246.932666,200.068583,245.087096 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(emdb 8350)] [Download the target GMM(pdb 1x18)] [Download gmfit result file(4060886)]