Pairwise fitting pdb-1x18 on emdb-8350 by gmfit










Pairwise fitting of target pdb-1x18 on reference emdb-8350 by gmfit(PID:4135185).





RANK[1] Corr.Coeff:0.603

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-1x18)

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b'CONTACT SITES OF ERA GTPASE ON THE THERMUS THERMOPHILUS 30S SUBUNIT   ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-1x18)]







REFERENCE(emdb-8350)

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Cryo-EM Structure of Yeast Pre-40S, Rio2 Region Local Class "R1" [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.603
0.573
0.545
0.520
0.484
0.475
0.469
0.430
0.422
0.419







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_8350.map.gz", and read it.

  2.  Download the Target molecule "1x18"(PDB-format) or
  "1x18"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.760157,-0.542106,-0.358165 101.747440 center 0,0,0 model #1
move 246.932666,200.068583,245.087096 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(emdb 8350)]

[Download the target GMM(pdb 1x18)]

[Download gmfit result file(4135185)]