Pairwise fitting pdb-1x18 on emdb-3338 by gmfit



Pairwise fitting of target pdb-1x18 on reference emdb-3338 by gmfit(PID:4091720).

RANK[1] Corr.Coeff:0.538 [JSmol] [Molmil]
TARGET(pdb-1x18)
display:
color:
b'CONTACT SITES OF ERA GTPASE ON THE THERMUS THERMOPHILUS 30S SUBUNIT ' [Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-1x18)]
REFERENCE(emdb-3338)
display:
color:
Atomic cryoEM structure of Hsp90/Cdc37/Cdk4 complex [Ngauss:20]
[Download the reference map]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.538 0.525 0.514 0.499 0.468 0.462 0.459 0.455 0.416 0.412

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference map "emd_3338.map.gz", and read it.
  2. Download the Target molecule "1x18"(PDB-format) or "1x18"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.602780,0.765244,0.225959 108.219608 center 0,0,0 model #1
    move 115.549839,230.533527,134.804034 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(emdb 3338)] [Download the target GMM(pdb 1x18)] [Download gmfit result file(4091720)]