Pairwise fitting pdb-1x18 on emdb-3338 by gmfit










Pairwise fitting of target pdb-1x18 on reference emdb-3338 by gmfit(PID:4118338).





RANK[1] Corr.Coeff:0.538

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-1x18)

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b'CONTACT SITES OF ERA GTPASE ON THE THERMUS THERMOPHILUS 30S SUBUNIT   ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-1x18)]







REFERENCE(emdb-3338)

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Atomic cryoEM structure of Hsp90/Cdc37/Cdk4 complex [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.538
0.525
0.514
0.499
0.468
0.462
0.459
0.455
0.416
0.412







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_3338.map.gz", and read it.

  2.  Download the Target molecule "1x18"(PDB-format) or
  "1x18"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.602780,0.765244,0.225959 108.219608 center 0,0,0 model #1
move 115.549839,230.533527,134.804034 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(emdb 3338)]

[Download the target GMM(pdb 1x18)]

[Download gmfit result file(4118338)]