Pairwise fitting pdb-1p58 on pdb-5wsn by gmfit










Pairwise fitting of target pdb-1p58 on reference pdb-5wsn by gmfit(PID:2487036).





RANK[1] Corr.Coeff:0.888

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-1p58)

display:



color:



b'COMPLEX ORGANIZATION OF DENGUE VIRUS MEMBRANE PROTEINS AS REVEALED BY ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-1p58)]







REFERENCE(pdb-5wsn)

display:



color:


b'STRUCTURE OF JAPANESE ENCEPHALITIS VIRUS                              ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
rank
1
2
3
4
5
6
7
8
9
10




Corr.Coeff.
0.888
0.553
0.475
0.475
0.467
0.442
0.412
0.382
0.356
0.335







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "5wsn"(PDB-format) or 
 "5wsn"(mmCIF-format), and read it.

  2.  Download the Target molecule "1p58"(PDB-format) or
  "1p58"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.656373,-0.721534,0.220369 93.337648 center 0,0,0 model #1
move 400.773653,410.254645,405.504649 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!