Pairwise fitting pdb-1p58 on pdb-5h37 by gmfit



Pairwise fitting of target pdb-1p58 on reference pdb-5h37 by gmfit(PID:1263451).

RANK[1] Corr.Coeff:0.699 [JSmol] [Molmil]
TARGET(pdb-1p58)
display:
color:
b'COMPLEX ORGANIZATION OF DENGUE VIRUS MEMBRANE PROTEINS AS REVEALED BY ' [Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-1p58)]
REFERENCE(pdb-5h37)
display:
color:
b'CRYO-EM STRUCTURE OF ZIKA VIRUS COMPLEXED WITH FAB C10 AT PH 8.0 ' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.699 0.515 0.464 0.450 0.440 0.420 0.416 0.362 0.339 0.324

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "5h37"(PDB-format) or "5h37"(mmCIF-format), and read it.
  2. Download the Target molecule "1p58"(PDB-format) or "1p58"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.860496,-0.457054,-0.225051 133.507577 center 0,0,0 model #1
    move -2.675099,-11.459152,21.788074 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!