Pairwise fitting pdb-1p58 on pdb-5gzr by gmfit



Pairwise fitting of target pdb-1p58 on reference pdb-5gzr by gmfit(PID:1375870).

RANK[1] Corr.Coeff:0.488 [JSmol] [Molmil]
TARGET(pdb-1p58)
display:
color:
b'COMPLEX ORGANIZATION OF DENGUE VIRUS MEMBRANE PROTEINS AS REVEALED BY ' [Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-1p58)]
REFERENCE(pdb-5gzr)
display:
color:
b'ZIKA VIRUS E PROTEIN COMPLEXED WITH A NEUTRALIZING ANTIBODY Z23-FAB ' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.488 0.397 0.392 0.387 0.365 0.350 0.348 0.325 0.301 0.240

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "5gzr"(PDB-format) or "5gzr"(mmCIF-format), and read it.
  2. Download the Target molecule "1p58"(PDB-format) or "1p58"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.968985,-0.091461,-0.229570 128.923669 center 0,0,0 model #1
    move 368.982193,491.425440,344.667078 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!