Pairwise fitting pdb-1p58 on emdb-6685 by gmfit










Pairwise fitting of target pdb-1p58 on reference emdb-6685 by gmfit(PID:20083).





RANK[1] Corr.Coeff:0.002

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-1p58)

display:



color:



b'COMPLEX ORGANIZATION OF DENGUE VIRUS MEMBRANE PROTEINS AS REVEALED BY ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-1p58)]







REFERENCE(emdb-6685)

display:



color:


Structure of Japanese encephalitis virus [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.002
0.002
0.002
0.002
0.002
0.002
0.002
0.002
0.002
0.002







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_6685.map.gz", and read it.

  2.  Download the Target molecule "1p58"(PDB-format) or
  "1p58"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.138247,-0.419184,0.897314 174.458194 center 0,0,0 model #1
move 490.907379,535.140866,260.672295 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(emdb 6685)]

[Download the target GMM(pdb 1p58)]

[Download gmfit result file(20083)]